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Links in Category: Software
This category is for sites about stand-alone computer programs which process biological information such as genetic sequences.
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Software Development
For sites that offer resources for developing bioinformatics software, such as APIs, libraries, etc. etc.
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ADF MAGE-ML
12-16-2014 05:06 AM by Medical Links
Open source Java software for checking and conversion of MicroArray Array Design data file (ADF -Array Design File- MAGE-ML).
Views: 56, Replies: 0
Last Reply: Never
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AnnHyb
12-16-2014 05:06 AM by Medical Links
Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence.
Views: 52, Replies: 0
Last Reply: Never
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ARCiB -- Accessible Retired Computers in Biology
12-16-2014 05:06 AM by Medical Links
NSF supported project to make old computers accessible to new software in bioinformatics. Provides transitional and supplemental support, especially in structural biology, for software packages on various platforms.
Views: 55, Replies: 0
Last Reply: Never
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BioAfrica.net: Bioinformatics Software and Tools
12-16-2014 05:06 AM by Medical Links
Bioinformatics software applications and tools developed by researchers. All the tools are open-source and freely available online.
Views: 47, Replies: 0
Last Reply: Never
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Biochemfusion: Enabling Biochemformatics
12-16-2014 05:06 AM by Medical Links
Software for working with post-translationally or chemically modified peptides and proteins including proteins as both sequences and chemical structures.
Views: 57, Replies: 0
Last Reply: Never
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BioEdit
12-16-2014 05:06 AM by Medical Links
Free Windows biological sequence alignment editor.
Views: 52, Replies: 0
Last Reply: Never
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BioMAJ
12-16-2014 05:06 AM by Medical Links
Workflow engine dedicated to bio-data synchronization and processing.
Views: 59, Replies: 0
Last Reply: Never
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Biomax BioXM Knowledge Management Environment
12-16-2014 05:06 AM by Medical Links
Project-centered, distributed software platform that provides a central inventory of information and knowledge. Users create, manage and visualize scientific models as an extendible network of interrelated concepts.
Views: 59, Replies: 0
Last Reply: Never
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biOpen
12-16-2014 05:06 AM by Medical Links
Commercial Mac OS X sequence analysis and structure visualization software.
Views: 91, Replies: 0
Last Reply: Never
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BioSoftwares
12-16-2014 05:06 AM by Medical Links
Provides information on bioinformatic algorithms, tools and services.
Views: 52, Replies: 0
Last Reply: Never
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CentiBiN: Centralities in Biological Networks
12-16-2014 05:06 AM by Medical Links
Application for the calculation and visualization of centralities for biological networks.
Views: 51, Replies: 0
Last Reply: Never
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CodonCode Corporation
12-16-2014 05:06 AM by Medical Links
Offers CodonCode Aligner, a DNA sequence assembly, sequence alignment, contig editing and mutation detection software for Windows and Mac OS X.
Views: 54, Replies: 0
Last Reply: Never
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Cytoscape
12-16-2014 05:06 AM by Medical Links
Open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. It is also a general platform for complex network analysis and...
Views: 61, Replies: 0
Last Reply: Never
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Darwin
12-16-2014 05:06 AM by Medical Links
An interactive tool for peptide and nucleotide sequence analysis.
Views: 53, Replies: 0
Last Reply: Never
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DNAMAN
12-16-2014 05:06 AM by Medical Links
Commercial software for DNA and Protein sequence analysis and manipulation. Available for Windows and Mac OS X.
Views: 47, Replies: 0
Last Reply: Never
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DNPTrapper
12-16-2014 05:06 AM by Medical Links
A Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.
Views: 48, Replies: 0
Last Reply: Never
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EMBOSS
12-16-2014 05:06 AM by Medical Links
The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.
Views: 49, Replies: 0
Last Reply: Never
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FASTA
12-16-2014 05:06 AM by Medical Links
William Pearson's package for fast sequence comparison tools.
Views: 52, Replies: 0
Last Reply: Never
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Geneious
12-16-2014 05:06 AM by Medical Links
This research software is designed for biologists and not computer scientists. It combines all the major DNA and protein sequence analysis tools into one software solution.
Views: 58, Replies: 0
Last Reply: Never
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Generic Model Organism Database Construction Set
12-16-2014 05:06 AM by Medical Links
Collection of interoperable open source software components for visualizing, annotation and managing data.
Views: 49, Replies: 0
Last Reply: Never
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GeneRunner
12-16-2014 05:06 AM by Medical Links
A fairly old Windows sequence analysis tool for everyday lab use. Formerly a commercial product.
Views: 51, Replies: 0
Last Reply: Never
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GeneSifter
12-16-2014 05:06 AM by Medical Links
Provides complete systems for data-intensive genetic analysis applications like microarrays and next gen sequencing-based transcription. From Geospiza, Seattle, USA.
Views: 53, Replies: 0
Last Reply: Never
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Genespotter
12-16-2014 05:06 AM by Medical Links
Commercial Windows software for analyzing biochip image data.
Views: 63, Replies: 0
Last Reply: Never
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Genome-tools Web Interface
12-16-2014 05:06 AM by Medical Links
Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.
Views: 48, Replies: 0
Last Reply: Never
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Gints
12-16-2014 05:06 AM by Medical Links
Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.
Views: 42, Replies: 0
Last Reply: Never
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